Annotations: 9TF9

PDGFRA-G680R mutant kinase domain in complex with avapritinib

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Platelet-derived growth factor receptor alpha	protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding platelet-derived growth factor binding growth factor binding platelet-derived growth factor receptor activity platelet-derived growth factor alpha-receptor activity enzyme regulator activity enzyme activator activity phospholipase C activator activity molecular function activator activity phospholipase activator activity molecular function regulator activity lipase activator activity identical protein binding protein homodimerization activity protein dimerization activity vascular endothelial growth factor binding vascular endothelial growth factor receptor activity	protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein modification process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus calcium-mediated signaling regulation of cell communication positive regulation of signaling multicellular organismal process cell activation cell surface receptor signaling pathway platelet-derived growth factor receptor-alpha signaling pathway platelet-derived growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway chemotaxis positive regulation of locomotion regulation of response to external stimulus response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to external stimulus taxis response to chemical regulation of locomotion locomotion cellular response to growth factor stimulus positive regulation of cell population proliferation positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway cellular response to endogenous stimulus VEGF-activated platelet-derived growth factor receptor signaling pathway cell population proliferation response to endogenous stimulus vascular endothelial growth factor signaling pathway regulation of cell population proliferation cellular response to vascular endothelial growth factor stimulus response to growth factor regulation of body fluid levels wound healing homotypic cell-cell adhesion hemostasis platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation regulation of biological quality response to wounding platelet activation embryonic organ morphogenesis developmental process chordate embryonic development embryonic morphogenesis animal organ development embryo development multicellular organism development anatomical structure morphogenesis embryo development ending in birth or egg hatching skeletal system development anatomical structure development animal organ morphogenesis embryonic skeletal system development skeletal system morphogenesis embryonic organ development animal gross anatomical part developmental process embryonic skeletal system morphogenesis system development metanephric glomerulus vasculature development glomerulus vasculature morphogenesis metanephric glomerulus development angiogenesis renal system development kidney vasculature development renal system vasculature development tube morphogenesis glomerular capillary formation metanephros development nephron development metanephric nephron development blood vessel development blood vessel morphogenesis tube development metanephric glomerulus morphogenesis vasculature development circulatory system development glomerulus development metanephric glomerulus vasculature morphogenesis glomerulus morphogenesis anatomical structure formation involved in morphogenesis glomerulus vasculature development kidney development kidney vasculature morphogenesis metanephric glomerular capillary formation renal system vasculature morphogenesis cell migration cell motility cell chemotaxis cellular response to chemical stimulus negative regulation of biological process regulation of cell activation negative regulation of platelet activation regulation of response to wounding regulation of coagulation regulation of response to stress negative regulation of cellular process regulation of multicellular organismal process regulation of hemostasis negative regulation of response to stimulus negative regulation of wound healing regulation of blood coagulation negative regulation of blood coagulation negative regulation of response to wounding negative regulation of cell activation negative regulation of hemostasis regulation of platelet activation negative regulation of coagulation negative regulation of response to external stimulus regulation of wound healing negative regulation of multicellular organismal process sensory organ development retina vasculature development in camera-type eye eye development retina development in camera-type eye visual system development camera-type eye development sensory system development positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization embryonic cranial skeleton morphogenesis cranial skeletal system development fibroblast proliferation regulation of fibroblast proliferation positive regulation of fibroblast proliferation regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound response to reactive oxygen species cellular response to reactive oxygen species response to oxidative stress cellular response to stress regulation of cell motility positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular developmental process cardiac muscle cell development cellular component assembly involved in morphogenesis cell development membraneless organelle assembly muscle cell differentiation striated muscle tissue development cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation cardiac cell development muscle tissue development heart development actomyosin structure organization organelle assembly cardiac muscle tissue development cardiac muscle cell differentiation tissue development cardiocyte differentiation myofibril assembly cardiac myofibril assembly striated muscle cell differentiation supramolecular fiber organization digestive system development embryonic digestive tract morphogenesis digestive tract development digestive tract morphogenesis embryonic digestive tract development regulation of developmental process regulation of cell differentiation stem cell differentiation regulation of stem cell differentiation mesenchymal stem cell differentiation regulation of mesenchymal stem cell differentiation rhythmic process ovulation cycle process gonad development reproductive system development luteinization reproductive process female gonad development sex differentiation multicellular organismal reproductive process female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction ovulation cycle development of primary sexual characteristics reproductive structure development	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system intracellular membraneless organelle actin cytoskeleton plasma membrane bounded cell projection cell projection actin-based cell projection cytoskeleton membraneless organelle microvillus cilium organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027290	Platelet-derived growth factor receptor alpha	Family
A	IPR001824	Tyrosine-protein kinase, receptor class III, conserved site	Conserved Site
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR008266	Tyrosine-protein kinase, active site	Active Site
A	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR055238	VEGFR1-3-like, N-terminal Ig-like domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A	IPR013098	Immunoglobulin I-set	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR050122	Receptor Tyrosine Kinase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P16234	gastrointestinal stromal tumor medulloblastoma hypereosinophilic syndrome mesenchymal chondrosarcoma cleft palate melanotic medulloblastoma Fetal Death adult medulloblastoma cancer medullomyoblastoma with myogenic differentiation idiopathic hypereosinophilic syndrome glioblastoma childhood medulloblastoma spina bifida ulcerative colitis gastrointestinal stromal tumor medulloblastoma hypereosinophilic syndrome mesenchymal chondrosarcoma cleft palate melanotic medulloblastoma Fetal Death adult medulloblastoma cancer medullomyoblastoma with myogenic differentiation idiopathic hypereosinophilic syndrome glioblastoma childhood medulloblastoma spina bifida ulcerative colitis cutaneous melanoma desmoplastic/nodular medulloblastoma ductal breast carcinoma in situ myeloid neoplasm associated with PDGFRA rearrangement oligodendroglioma acute lymphoblastic leukemia pancreatic ductal adenocarcinoma breast cancer renal cell carcinoma large cell medulloblastoma chronic eosinophilic leukemia lung adenocarcinoma lung disease thyroid gland follicular carcinoma corneal disease malignant mesothelioma uterine corpus leiomyoma cystic fibrosis digestive system disease Emery-Dreifuss muscular dystrophy fetal alcohol spectrum disorder osteosarcoma adrenal cortex adenoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma astrocytic tumor psoriasis breast carcinoma interstitial lung disease Carney-Stratakis syndrome Sjogren syndrome lung cancer tethered spinal cord syndrome congenital anemia thyroid gland papillary carcinoma malignant pancreatic neoplasm melanoma Duchenne muscular dystrophy metastatic melanoma endometrial carcinoma non-small cell lung carcinoma fetal alcohol syndrome ovarian cancer adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer atopic eczema idiopathic pulmonary fibrosis Burkitt lymphoma invasive ductal breast carcinoma sarcoma lung carcinoma thymic carcinoma congestive heart failure malignant colon neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9TF9 | pdb_00009tf9

PDGFRA-G680R mutant kinase domain in complex with avapritinib

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation