Annotations: 9DI4

RMI1-RMI2 bound to cyclic peptide L4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8053467	3000135	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleic acid-binding proteins	8053535	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	V-set	e9di4B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF16100	RecQ-mediated genome instability protein 2 (RMI2)	RecQ-mediated genome instability protein 2	RMI2 is a eukaryotic family of an OB3, oligo-nucleotide-binding proteins. It is an essential component of the RMI complex that plays a vital role in the processing of homologous recombination intermediates in order to limit DNA-crossover-formation in ...	RMI2 is a eukaryotic family of an OB3, oligo-nucleotide-binding proteins. It is an essential component of the RMI complex that plays a vital role in the processing of homologous recombination intermediates in order to limit DNA-crossover-formation in cells [1].	Domain
A	PF16099	Recq-mediated genome instability protein 1, C-terminal OB-fold (RMI1_C)	Recq-mediated genome instability protein 1, C-terminal OB-fold	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	L4 cyclic peptide	-	-	-
B	RecQ-mediated genome instability protein 2	-	nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cellular component organization regulation of cell cycle process nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cellular component organization regulation of cell cycle process biological regulation chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization cellular component organization organelle organization regulation of sister chromatid segregation nuclear chromosome segregation cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen supramolecular complex nuclear ribonucleoprotein granule nuclear lumen
A	RecQ-mediated genome instability protein 1	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B	IPR032245	RecQ-mediated genome instability protein 2	Family
A	IPR042470	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Homologous Superfamily
A	IPR032199	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Domain
A	IPR049363	RMI1, N-terminal domain	Domain
A	IPR044881	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Homologous Superfamily
A	IPR013894	RecQ mediated genome instability protein 1, OB-fold domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: Q96E14	ovarian cancer adrenal cortex carcinoma atypical teratoid rhabdoid tumor Crohn disease inflammatory bowel disease leprosy nasal cavity disease oligodendroglioma primary biliary cholangitis allergic rhinitis breast cancer drug dependence interstitial cystitis lung adenocarcinoma nasopharyngeal carcinoma ovarian cancer adrenal cortex carcinoma atypical teratoid rhabdoid tumor Crohn disease inflammatory bowel disease leprosy nasal cavity disease oligodendroglioma primary biliary cholangitis allergic rhinitis breast cancer drug dependence interstitial cystitis lung adenocarcinoma nasopharyngeal carcinoma osteosarcoma psoriasis astrocytic tumor celiac disease ductal breast carcinoma in situ invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma
A	: Q9H9A7	attention deficit hyperactivity disorder, inattentive type breast cancer hepatocellular carcinoma malignant ependymoma non-small cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma invasive ductal breast carcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm Bloom syndrome ductal breast carcinoma in situ lung cancer medulloblastoma primitive neuroectodermal tumor

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	ACE	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
C	NH2	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109