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RMI1-RMI2 bound to cyclic peptide L4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MXN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 293 0.01M zinc chloride, 0.1M sodium acetate pH 5.0, 20% w/v PEG 6000
Crystal Properties Matthews coefficient Solvent content 3.65 66.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.298 α = 90 b = 136.298 β = 90 c = 88.608 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 49.169 99.6 0.999 22.2 38.8 13881
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.83 0.894
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.696 49.169 13858 673 99.77 0.173 0.1693 0.1719 0.2482 0.2506 61.815
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.401 -1.701 -3.401 11.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21 r_dihedral_angle_3_deg 17.726 r_dihedral_angle_6_deg 16.483 r_lrange_other 15.019 r_lrange_it 15.018 r_scangle_it 14.219 r_scangle_other 14.215 r_scbond_it 10.732 r_scbond_other 10.728 r_mcangle_it 9.794
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21 r_dihedral_angle_3_deg 17.726 r_dihedral_angle_6_deg 16.483 r_lrange_other 15.019 r_lrange_it 15.018 r_scangle_it 14.219 r_scangle_other 14.215 r_scbond_it 10.732 r_scbond_other 10.728 r_mcangle_it 9.794 r_mcangle_other 9.784 r_dihedral_angle_1_deg 7.959 r_mcbond_it 7.644 r_mcbond_other 7.636 r_angle_refined_deg 2.979 r_angle_other_deg 0.934 r_nbd_refined 0.235 r_symmetry_nbd_other 0.213 r_nbtor_refined 0.198 r_xyhbond_nbd_refined 0.19 r_symmetry_nbd_refined 0.156 r_nbd_other 0.151 r_chiral_restr 0.113 r_symmetry_nbtor_other 0.104 r_symmetry_xyhbond_nbd_refined 0.034 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2281 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing