9M5A | pdb_00009m5a

cryo-EM structure of PSII D1-V185T from Thermosynechococcus vestitus BP-1

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
Q [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C,
S [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
T [auth d]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
F [auth H],
V [auth h]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
G [auth I],
W [auth i]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
AA [auth m],
K [auth M]		PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
BA [auth t],
L [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
CA [auth u],
M [auth U]		PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
DA [auth v],
N [auth V]		PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1]. Domain
EA [auth x],
O [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
GA [auth E],
JA [auth e]		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
GA [auth E],
JA [auth e]		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
IA [auth Z],
LA [auth z]		PF01737YCF9 (Ycf9)YCF9- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
Q [auth a]		Photosystem II protein D1 3
B,
R [auth b]		Photosystem II CP47 reaction center protein
C,
S [auth c]		Photosystem II CP43 reaction center protein
D,
T [auth d]		Photosystem II D2 protein
E [auth F],
U [auth f]		Cytochrome b559 subunit beta
F [auth H],
V [auth h]		Photosystem II reaction center protein H
G [auth I],
W [auth i]		Photosystem II reaction center protein I-
H [auth J],
X [auth j]		Photosystem II reaction center protein J-
I [auth K],
Y [auth k]		Photosystem II reaction center protein K-
J [auth L],
Z [auth l]		Photosystem II reaction center protein L-
AA [auth m],
K [auth M]		Photosystem II reaction center protein M-
BA [auth t],
L [auth T]		Photosystem II reaction center protein T-
CA [auth u],
M [auth U]		Photosystem II extrinsic protein U-
DA [auth v],
N [auth V]		Photosystem II extrinsic protein V
EA [auth x],
O [auth X]		Photosystem II reaction center protein X-
FA [auth y],
P [auth Y]		Photosystem II reaction center protein Psb30-
GA [auth E],
JA [auth e]		Cytochrome b559 subunit alpha
HA [auth O],
KA [auth o]		Photosystem II extrinsic protein O
IA [auth Z],
LA [auth z]		Photosystem II reaction center protein Z-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
Q [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
Q [auth a]		IPR005867Photosystem II protein D1Family
A,
Q [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
A,
Q [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
Q [auth a]		IPR055266Photosystem II protein D1/D2Family
B,
R [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
R [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
R [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
S [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
S [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
S [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
S [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
T [auth d]		IPR005868Photosystem II D2Family
D,
T [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
T [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
D,
T [auth d]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
T [auth d]		IPR055266Photosystem II protein D1/D2Family
E [auth F],
U [auth f]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
E [auth F],
U [auth f]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
E [auth F],
U [auth f]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F [auth H],
V [auth h]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
F [auth H],
V [auth h]		IPR001056Photosystem II reaction centre protein HFamily
G [auth I],
W [auth i]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
G [auth I],
W [auth i]		IPR003686Photosystem II PsbIFamily
H [auth J],
X [auth j]		IPR002682Photosystem II PsbJFamily
H [auth J],
X [auth j]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
I [auth K],
Y [auth k]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
I [auth K],
Y [auth k]		IPR003687Photosystem II PsbKFamily
J [auth L],
Z [auth l]		IPR003372Photosystem II PsbLFamily
J [auth L],
Z [auth l]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
AA [auth m],
K [auth M]		IPR007826Photosystem II PsbMFamily
AA [auth m],
K [auth M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
BA [auth t],
L [auth T]		IPR001743Photosystem II PsbTFamily
BA [auth t],
L [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
CA [auth u],
M [auth U]		IPR010527Photosystem II PsbU, oxygen evolving complexFamily
DA [auth v],
N [auth V]		IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
DA [auth v],
N [auth V]		IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
DA [auth v],
N [auth V]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
DA [auth v],
N [auth V]		IPR009056Cytochrome c-like domainDomain
DA [auth v],
N [auth V]		IPR029490Cytochrome c-550 domainDomain
EA [auth x],
O [auth X]		IPR009518Photosystem II PsbXFamily
EA [auth x],
O [auth X]		IPR023431Photosystem II PsbX, type 1 subfamilyFamily
FA [auth y],
P [auth Y]		IPR010284Photosystem II reaction center protein Ycf12Family
GA [auth E],
JA [auth e]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
GA [auth E],
JA [auth e]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
GA [auth E],
JA [auth e]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
GA [auth E],
JA [auth e]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
GA [auth E],
JA [auth e]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
HA [auth O],
KA [auth o]		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
HA [auth O],
KA [auth o]		IPR002628Photosystem II extrinsic protein OFamily
IA [auth Z],
LA [auth z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
IA [auth Z],
LA [auth z]		IPR002644Photosystem II PsbZ, reaction centreFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
G [auth I],
W [auth i]		FME Parent Component: MET

:  AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
AA [auth m],
K [auth M]		FME Parent Component: MET

:  AA0021 , AA0566 , AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
BA [auth t],
L [auth T]		FME Parent Component: MET

:  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891