AF_AFA1ZAW0F1

Computed structure model of Endoribonuclease Dcr-2

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Endoribonuclease Dcr-2	regulatory RNA binding RNA binding siRNA binding binding nucleic acid binding mRNA 3'-UTR binding mRNA binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity DNA endonuclease activity deoxyribonuclease I activity hydrolase activity, acting on ester bonds regulatory RNA binding RNA binding siRNA binding binding nucleic acid binding mRNA 3'-UTR binding mRNA binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity DNA endonuclease activity deoxyribonuclease I activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity DNA endonuclease activity, producing 5'-phosphomonoesters catalytic activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ATP-dependent activity, acting on RNA ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ribonuclease III activity double-stranded RNA-specific ribonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism catalytic activity, acting on RNA RNA nuclease activity RNA endonuclease activity	regulation of biosynthetic process regulation of biological process regulation of cellular process sex-chromosome dosage compensation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process cellular component organization regulation of gene expression biosynthetic process dosage compensation by hyperactivation of X chromosome chromatin organization chromatin remodeling regulation of biosynthetic process regulation of biological process regulation of cellular process sex-chromosome dosage compensation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process cellular component organization regulation of gene expression biosynthetic process dosage compensation by hyperactivation of X chromosome chromatin organization chromatin remodeling cellular process regulation of macromolecule biosynthetic process metabolic process cellular component organization or biogenesis macromolecule metabolic process regulation of metabolic process behavior multicellular organismal process locomotory behavior negative regulation of biological process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative regulation of cellular process RNA processing negative regulation of macromolecule metabolic process negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process siRNA processing regulatory ncRNA processing regulatory ncRNA-mediated gene silencing negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process biological process involved in interspecies interaction between organisms response to stimulus response to biotic stimulus post-transcriptional regulation of gene expression response to stress innate immune response response to external biotic stimulus response to virus RNAi-mediated antiviral immune response immune response response to other organism defense response defense response to symbiont response to external stimulus regulatory ncRNA-mediated post-transcriptional gene silencing defense response to virus immune system process defense response to other organism post-transcriptional gene silencing global gene silencing by mRNA cleavage cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of Toll signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of response to stimulus positive regulation of Toll signaling pathway regulation of cell communication Toll signaling pathway positive regulation of signaling catabolic process lncRNA catabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleic acid catabolic process RNA catabolic process ribonucleoprotein complex biogenesis RISC complex assembly protein-RNA complex assembly cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly protein-containing complex organization heterochromatin formation heterochromatin organization negative regulation of gene expression, epigenetic cellular component disassembly DNA metabolic process cell death execution phase of apoptosis apoptotic DNA fragmentation cellular component disassembly involved in execution phase of apoptosis DNA catabolic process apoptotic nuclear changes apoptotic process programmed cell death regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus regulation of defense response to virus regulation of response to stress positive regulation of defense response to virus by host regulation of defense response to virus by host detection of virus positive regulation of response to biotic stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of immune system process positive regulation of immune system process positive regulation of innate immune response regulation of innate immune response positive regulation of defense response regulation of immune response cellular response to virus	protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle supramolecular complex ribonucleoprotein granule protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle supramolecular complex ribonucleoprotein granule RISC-loading complex endoribonuclease complex catalytic complex intracellular protein-containing complex endonuclease complex perinuclear region of cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR048513	Dicer, partner-binding domain	Domain
A	IPR000999	Ribonuclease III domain	Domain
A	IPR011545	DEAD/DEAH-box helicase domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001650	Helicase, C-terminal domain-like	Domain
A	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A	IPR003100	PAZ domain	Domain
A	IPR048512	Dicer, platform domain	Domain
A	IPR036389	Ribonuclease III, endonuclease domain superfamily	Homologous Superfamily
A	IPR005034	Dicer, dimerisation domain	Domain
A	IPR014720	Double-stranded RNA-binding domain	Domain
A	IPR038248	Dicer dimerisation domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.