AF_AFP05622F1

Computed structure model of Platelet-derived growth factor receptor beta

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Platelet-derived growth factor receptor beta	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein protein kinase activity signaling receptor activity platelet-derived growth factor receptor activity kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein protein kinase activity signaling receptor activity platelet-derived growth factor receptor activity phosphotransferase activity, alcohol group as acceptor protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity phosphatidylinositol 3-kinase binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding platelet-derived growth factor beta-receptor activity platelet-derived growth factor binding growth factor binding phospholipase C activator activity phospholipase activator activity lipase activator activity kinase binding enzyme binding protein kinase binding vascular endothelial growth factor binding	multicellular organismal process angiogenesis multicellular organism development tube morphogenesis anatomical structure development cell migration cell motility blood vessel development system development developmental process heart development angiogenesis involved in coronary vascular morphogenesis blood vessel morphogenesis tube development multicellular organismal process angiogenesis multicellular organism development tube morphogenesis anatomical structure development cell migration cell motility blood vessel development system development developmental process heart development angiogenesis involved in coronary vascular morphogenesis blood vessel morphogenesis tube development animal organ development cell migration involved in heart development coronary vasculature development vasculature development circulatory system development anatomical structure morphogenesis anatomical structure formation involved in morphogenesis cell migration involved in coronary angiogenesis cellular process coronary vasculature morphogenesis lung growth developmental growth growth respiratory tube development organ growth lung development respiratory system development cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus calcium-mediated signaling regulation of cell communication positive regulation of signaling cell migration involved in vasculogenesis cellular developmental process vasculogenesis cell differentiation metanephric glomerulus vasculature development connective tissue development metanephric glomerulus development renal system development kidney vasculature development renal system vasculature development metanephros development metanephric glomerular mesangial cell proliferation involved in metanephros development nephron development metanephric nephron development cell population proliferation cell proliferation involved in kidney development glomerular mesangium development tissue development glomerulus development metanephric glomerular mesangium development cell proliferation involved in metanephros development glomerular mesangial cell proliferation glomerulus vasculature development kidney development platelet-derived growth factor receptor-beta signaling pathway cell surface receptor signaling pathway platelet-derived growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway chemotaxis positive regulation of locomotion regulation of response to external stimulus response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to external stimulus taxis response to chemical regulation of locomotion locomotion cellular response to growth factor stimulus positive regulation of cell population proliferation positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway cellular response to endogenous stimulus VEGF-activated platelet-derived growth factor receptor signaling pathway response to endogenous stimulus vascular endothelial growth factor signaling pathway regulation of cell population proliferation cellular response to vascular endothelial growth factor stimulus response to growth factor positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death glomerulus vasculature morphogenesis glomerular capillary formation metanephric glomerulus morphogenesis metanephric glomerulus vasculature morphogenesis glomerulus morphogenesis kidney vasculature morphogenesis metanephric glomerular capillary formation renal system vasculature morphogenesis regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration positive regulation of cell motility regulation of cell migration positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle cellular component organization regulation of mitotic cell cycle positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process embryonic organ development cell activation regulation of cell activation positive regulation of hepatic stellate cell activation fibroblast activation regulation of hepatic stellate cell activation positive regulation of cell activation hepatic stellate cell activation positive regulation of multicellular organismal process regulation of multicellular organismal process cell chemotaxis cellular response to chemical stimulus smooth muscle cell chemotaxis regulation of calcium ion import regulation of calcium ion transport regulation of localization positive regulation of calcium ion transport positive regulation of calcium ion import transport regulation of transport regulation of monoatomic ion transport establishment of localization calcium ion transport metal ion transport localization positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport calcium ion import monoatomic cation transport regulation of metal ion transport skeletal system development skeletal system morphogenesis animal organ morphogenesis regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation regulation of biosynthetic process collagen biosynthetic process regulation of collagen biosynthetic process regulation of collagen metabolic process positive regulation of metabolic process positive regulation of collagen metabolic process biosynthetic process positive regulation of biosynthetic process positive regulation of collagen biosynthetic process collagen metabolic process regulation of metabolic process sensory organ development retina vasculature development in camera-type eye eye development retina development in camera-type eye visual system development camera-type eye development sensory system development carbohydrate derivative biosynthetic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process macromolecule biosynthetic process aminoglycan metabolic process aminoglycan biosynthetic process glycosaminoglycan biosynthetic process positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade aorta morphogenesis artery development aorta development artery morphogenesis regulation of metanephric mesenchymal cell migration positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway cell migration involved in kidney development cell migration involved in metanephros development positive regulation of metanephric mesenchymal cell migration metanephric mesenchymal cell migration negative regulation of programmed cell death negative regulation of biological process negative regulation of apoptotic process negative regulation of cellular process regulation of cytoskeleton organization regulation of actin filament-based process actin cytoskeleton organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization fibroblast proliferation regulation of fibroblast proliferation positive regulation of fibroblast proliferation small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Rho protein signal transduction regulation of Rho protein signal transduction positive regulation of Rho protein signal transduction positive regulation of small GTPase mediated signal transduction regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction reactive oxygen species metabolic process positive regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process smooth muscle cell differentiation cardiac vascular smooth muscle cell differentiation muscle cell differentiation cardiocyte differentiation muscle structure development vascular associated smooth muscle cell differentiation cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to stress response to stress peptidyl-tyrosine modification peptidyl-amino acid modification peptidyl-tyrosine phosphorylation positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process regulation of MAP kinase activity regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of macromolecule metabolic process positive regulation of protein phosphorylation positive regulation of MAP kinase activity positive regulation of phosphorus metabolic process regulation of protein metabolic process regulation of molecular function positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of molecular function positive regulation of protein modification process positive regulation of protein kinase activity positive regulation of catalytic activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of phosphorylation plasma membrane bounded cell projection organization ruffle organization cell projection organization plasma membrane bounded cell projection assembly ruffle assembly cellular component biogenesis cellular component assembly cell projection assembly adrenal gland development endocrine system development gland development cardiac muscle cell development cellular component assembly involved in morphogenesis cell development membraneless organelle assembly striated muscle tissue development striated muscle cell development cellular anatomical entity morphogenesis muscle cell development cardiac cell development muscle tissue development actomyosin structure organization organelle assembly cardiac muscle tissue development cardiac muscle cell differentiation myofibril assembly cardiac myofibril assembly striated muscle cell differentiation supramolecular fiber organization multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process regulation of nucleobase-containing compound metabolic process positive regulation of DNA biosynthetic process DNA metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of DNA metabolic process regulation of macromolecule biosynthetic process DNA biosynthetic process regulation of DNA metabolic process smooth muscle tissue development response to ceramide response to lipid	cellular anatomical structure membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system ruffle cell projection cellular anatomical structure membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system ruffle cell projection cell leading edge plasma membrane bounded cell projection cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole lysosomal lumen intracellular organelle lumen organelle lumen lysosome cell surface cytoplasmic vesicle intracellular vesicle vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001824	Tyrosine-protein kinase, receptor class III, conserved site	Conserved Site
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR008266	Tyrosine-protein kinase, active site	Active Site
A	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR027288	Platelet-derived growth factor receptor beta	Family
A	IPR013151	Immunoglobulin-like beta-sandwich domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR050122	Receptor Tyrosine Kinase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.