AF_AFP29323F1

Computed structure model of Ephrin type-B receptor 2

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ephrin type-B receptor 2	molecular transducer activity catalytic activity, acting on a protein ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane-ephrin receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity molecular transducer activity catalytic activity, acting on a protein ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane-ephrin receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity amyloid-beta binding binding peptide binding axon guidance receptor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding identical protein binding protein binding signaling receptor binding	developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development cell migration cellular process cell motility hindbrain development animal gross anatomical part developmental process developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development cell migration cellular process cell motility hindbrain development animal gross anatomical part developmental process hindbrain tangential cell migration cell migration in hindbrain system development cellular response to stimulus cell surface receptor signaling pathway via STAT regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT regulation of cell communication signal transduction regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT behavior system process learning learning or memory nervous system process cognition regulation of biosynthetic process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process positive regulation of protein localization to plasma membrane regulation of localization cellular localization regulation of protein localization localization intracellular protein localization regulation of protein localization to membrane positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of protein localization to plasma membrane cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T-helper 17 type immune response immune response regulation of adaptive immune response adaptive immune response regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains immune system process regulation of immune response regulation of immune system process T-helper 17 type immune response B cell activation cell activation lymphocyte activation leukocyte activation negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade regulation of synaptic plasticity trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission positive regulation of synaptic plasticity synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of biological quality regulation of neuronal synaptic plasticity dendritic spine development plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization generation of neurons neurogenesis neuron differentiation dendrite development cell differentiation neuron development cellular component organization or biogenesis regulation of immune effector process immunoglobulin production positive regulation of immune effector process positive regulation of immune system process positive regulation of immunoglobulin production production of molecular mediator of immune response immune effector process regulation of immunoglobulin production positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis dendritic spine morphogenesis synapse organization dendritic spine organization postsynapse organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis cell junction organization neuron projection organization positive regulation of protein localization to cell surface protein localization to cell surface regulation of protein localization to cell surface phosphorylation phosphate-containing compound metabolic process neuron recognition neuron projection fasciculation axonal fasciculation cell recognition axon development positive regulation of cell population proliferation positive regulation of B cell proliferation regulation of leukocyte activation regulation of cell activation leukocyte proliferation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of B cell activation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation positive regulation of multicellular organismal process regulation of lymphocyte activation positive regulation of dendritic spine morphogenesis positive regulation of nervous system development positive regulation of dendritic spine development regulation of cell differentiation regulation of neurogenesis regulation of cell morphogenesis regulation of cell development positive regulation of developmental process regulation of dendrite morphogenesis regulation of synapse structure or activity positive regulation of cell projection organization regulation of cell projection organization positive regulation of cell development regulation of postsynapse organization positive regulation of cell morphogenesis regulation of dendrite development regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process regulation of dendritic spine development regulation of nervous system development positive regulation of neuron projection development positive regulation of cell differentiation positive regulation of neurogenesis regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of dendrite morphogenesis regulation of synapse organization regulation of dendritic spine morphogenesis regulation of plasma membrane bounded cell projection organization cell adhesion regulation of cell adhesion negative regulation of cell adhesion corpus callosum development forebrain development telencephalon development intercellular transport transport establishment of localization vesicle-mediated intercellular transport vesicle-mediated transport cellular component biogenesis cellular component assembly cell junction assembly regulation of synapse assembly positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly synapse assembly positive regulation of synapse assembly regulation of body fluid levels blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development positive regulation of cell communication long-term synaptic potentiation positive regulation of long-term synaptic potentiation positive regulation of synaptic transmission regulation of long-term synaptic potentiation positive regulation of signaling ear morphogenesis embryonic organ morphogenesis ear development sensory organ development embryonic morphogenesis embryo development sensory organ morphogenesis inner ear development inner ear morphogenesis animal organ morphogenesis embryonic organ development regulation of defense response behavioral fear response defense response regulation of fear response multicellular organismal response to stress regulation of behavioral fear response regulation of behavior behavioral defense response fear response regulation of response to stress response to stress urogenital system development biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of Ras protein signal transduction Ras protein signal transduction negative regulation of small GTPase mediated signal transduction negative regulation of Ras protein signal transduction commissural neuron axon guidance axonogenesis axon guidance neuron projection guidance positive regulation of signal transduction glutamate receptor signaling pathway positive regulation of response to stimulus positive regulation of glutamate receptor signaling pathway regulation of glutamate receptor signaling pathway protein phosphorylation primary metabolic process macromolecule modification protein metabolic process peptidyl-tyrosine phosphorylation protein modification process neuron projection retraction tight junction organization tight junction assembly cell-cell junction assembly cell-cell junction organization positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion postsynaptic membrane assembly membrane biogenesis postsynaptic membrane organization membrane organization postsynapse assembly membrane assembly filopodium assembly regulation of cell projection assembly regulation of filopodium assembly plasma membrane bounded cell projection assembly regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production cytokine production regulation of cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of cytokine production wound healing regulation of response to external stimulus regulation of blood coagulation hemostasis blood coagulation regulation of coagulation regulation of response to wounding regulation of wound healing coagulation response to wounding regulation of hemostasis negative regulation of glutamate receptor signaling pathway neuron projection maintenance cellular response to nitrogen compound response to nitrogen compound cellular response to amyloid-beta response to amyloid-beta roof of mouth development regulation of cytokine production involved in inflammatory response negative regulation of cytokine production involved in inflammatory response negative regulation of macromolecule metabolic process production of molecular mediator involved in inflammatory response negative regulation of metabolic process negative regulation of cytokine production cytokine production involved in inflammatory response negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process inflammatory response negative regulation of multicellular organismal process	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane intracellular anatomical structure cytoplasm cytosol presynapse cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane intracellular anatomical structure cytoplasm cytosol presynapse presynaptic membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse neuron spine dendritic spine cell body neuronal cell body axon cell surface neuron to neuron synapse hippocampal mossy fiber to CA3 synapse extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001426	Tyrosine-protein kinase, receptor class V, conserved site	Conserved Site
A	IPR008266	Tyrosine-protein kinase, active site	Active Site
A	IPR001090	Ephrin, ligand binding domain	Domain
A	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A	IPR034238	Ephrin type-B receptor 2, ligand binding domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR011641	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain
A	IPR016257	Ephrin receptor type-A /type-B	Family
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR027936	Ephrin, transmembrane domain	Domain
A	IPR001660	Sterile alpha motif domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A	IPR050449	Ephrin receptor tyrosine kinases	Family
A	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A	IPR003961	Fibronectin type III	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.