AF_AFP42496F1

Computed structure model of Phytochrome 1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Phytochrome 1	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity molecular transducer activity photoreceptor activity signaling receptor activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cellular response to stimulus response to light stimulus cellular response to red or far red light response to stimulus signaling response to red or far red light detection of abiotic stimulus cell communication cellular response to environmental stimulus cellular response to light stimulus signal transduction phototransduction detection of light stimulus detection of external stimulus red or far-red light signaling pathway response to external stimulus cellular response to radiation detection of stimulus red, far-red light phototransduction response to radiation response to abiotic stimulus cellular response to abiotic stimulus protein-tetrapyrrole linkage protein metabolic process protein maturation detection of visible light	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013767	PAS fold	Domain
A	IPR044767	Phytochrome A/B/C/D/E-like, histidine-kinase-related domain	Domain
A	IPR013515	Phytochrome, central region	Domain
A	IPR000014	PAS domain	Domain
A	IPR012129	Phytochrome A/B/C/D/E	Family
A	IPR043150	Phytochrome, PHY domain superfamily	Homologous Superfamily
A	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A	IPR013654	PAS fold-2	Domain
A	IPR035965	PAS domain superfamily	Homologous Superfamily
A	IPR003594	Histidine kinase/HSP90-like ATPase domain	Domain
A	IPR013516	Phytochrome chromophore binding site	Binding Site
A	IPR005467	Histidine kinase domain	Domain
A	IPR003018	GAF domain	Domain
A	IPR029016	GAF-like domain superfamily	Homologous Superfamily
A	IPR001294	Phytochrome	Family
A	IPR016132	Phytochrome chromophore attachment domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.