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CRYSTAL STRUCTURES OF THROMBIN WITH THIAZOLE-CONTAINING INHIBITORS: PROBES OF THE S1' BINDING SITE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPC PDB ENTRY 1FPC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion - hanging drop and macroseeding 7.3 0.1 M SODIUM PHOSPHATE BUFFER AT PH 7.3, 27-28% PEG 8000; HANGING DROPS WITH MACROSEEDING, vapor diffusion - hanging drop and macroseeding
Crystal Properties Matthews coefficient Solvent content 2.4 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.47 α = 90 b = 72 β = 101.13 c = 73.39 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS II COLLIMATOR 1994-03-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.2 69.5 0.052 12 2.2 23968 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 2 48 0.165 2.61
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION PREVIOUS STRUCTURE PDB ENTRY 1FPC 1.8 7 4 19906 65 0.155 0.1491 26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_scangle_it 4.1 p_planar_tor 4 p_scbond_it 2.8 p_mcangle_it 1.8 p_mcbond_it 1.1 p_xyhbond_nbd 0.25 p_chiral_restr 0.21 p_multtor_nbd 0.21
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_scangle_it 4.1 p_planar_tor 4 p_scbond_it 2.8 p_mcangle_it 1.8 p_mcbond_it 1.1 p_xyhbond_nbd 0.25 p_chiral_restr 0.21 p_multtor_nbd 0.21 p_singtor_nbd 0.19 p_planar_d 0.051 p_angle_d 0.042 p_plane_restr 0.032 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 44
Software Software Software Name Purpose R-AXIS data collection R-AXIS data reduction PROFFT refinement R-AXIS data scaling