☰ Navigation Tabs
THE STRUCTURE OF AN INTERMEDIATE IN CLASS II MHC MATURATION: CLIP BOUND TO HLA-DR3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLH PDB ENTRY 1DLH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 12% PEG 4K, 100 MM MGCL2, 100 MM ACETATE BUFFER, PH 4.5
Crystal Properties Matthews coefficient Solvent content 2.7 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.45 α = 90 b = 78.45 β = 90 c = 159.1 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE FUJI MIRRORS 1994-07-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 15 96.9 0.071 6.7 3.2 14428 -3 30.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 3 97.2 0.314 2.3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DLH 2.75 6 13095 1323 97.9 0.246 0.246 0.2382 0.325 0.3144 RANDOM 47.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10 -10 -10 10
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.6 x_scangle_it 9.35 x_mcangle_it 5.98 x_scbond_it 5.52 x_mcbond_it 3.53 x_angle_deg 1.6 x_improper_angle_d 1.31 x_bond_d 0.015 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.6 x_scangle_it 9.35 x_mcangle_it 5.98 x_scbond_it 5.52 x_mcbond_it 3.53 x_angle_deg 1.6 x_improper_angle_d 1.31 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3108 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction ROTAVATA/AGROVATA data reduction AMoRE phasing X-PLOR refinement CCP4 data scaling ROTAVATA data scaling