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FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) VARIANT FOR CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VFA PDB ENTRY 1VFA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.35 39.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.179 α = 90 b = 90.179 β = 90 c = 56.627 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 269 IMAGE PLATE MARRESEARCH 1992-06-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 17.18 97.1 0.089 8.1 218064 22.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.96 2.11 81.6 0.261 7.1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1VFA 2.01 6 15187 15187 0.155 0.1592 21.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.8 p_transverse_tor 11.4 p_scangle_it 4.211 p_scbond_it 2.868 p_planar_tor 2.36 p_mcangle_it 1.947 p_mcbond_it 1.259 p_singtor_nbd 0.177 p_multtor_nbd 0.176 p_xyhbond_nbd 0.16
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.8 p_transverse_tor 11.4 p_scangle_it 4.211 p_scbond_it 2.868 p_planar_tor 2.36 p_mcangle_it 1.947 p_mcbond_it 1.259 p_singtor_nbd 0.177 p_multtor_nbd 0.176 p_xyhbond_nbd 0.16 p_chiral_restr 0.116 p_angle_d 0.046 p_planar_d 0.045 p_bond_d 0.013 p_plane_restr 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1717 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction AGROVATA/ROTAVATA data reduction ALMN/CCP4 model building CCP4 refinement Agrovata data scaling ROTAVATA data scaling CCP4 phasing