X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HCOPDB ENTRY 1HCO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch method6.7PROTEIN WAS BATCH CRYSTALLIZED IN 2.5 M SODIUM/POTASSIUM PHOSPHATE, PH 6.7, AND 1% (W/V) CARBOXYHEMOGLOBIN., batch method
Crystal Properties
Matthews coefficientSolvent content
2.2345

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.1α = 90
b = 54.1β = 90
c = 195.1γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray273AREA DETECTORSIEMENSMONOCHROMATOR1996-04-23M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.26800.110.117.34.8124121
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.3660.3690.3692.32.8

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1HCO2.26159019800.15524.05
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.8
p_staggered_tor21.4
p_planar_tor3.4
p_scangle_it1.955
p_scbond_it1.278
p_mcangle_it1.149
p_mcbond_it0.691
p_multtor_nbd0.23
p_chiral_restr0.216
p_singtor_nbd0.204
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.8
p_staggered_tor21.4
p_planar_tor3.4
p_scangle_it1.955
p_scbond_it1.278
p_mcangle_it1.149
p_mcbond_it0.691
p_multtor_nbd0.23
p_chiral_restr0.216
p_singtor_nbd0.204
p_hb_or_metal_coord0.189
p_xyhbond_nbd0.189
p_planar_d0.04
p_angle_d0.039
p_plane_restr0.023
p_bond_d0.018
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4380
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms243

Software

Software
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
XENGENdata reduction
XENGENdata scaling
X-PLORphasing