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HYDROLASE PHOSPHORIC DIESTER, RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RN3 PDB ENTRY 3RN3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 60% METHANOL, pH 4.50
Crystal Properties Matthews coefficient Solvent content 1.95 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.9 α = 90 b = 44.8 β = 90 c = 52.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 292 IMAGE PLATE RIGAKU RAXIS II 1992-08-28 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 10 82 0.083 6.36 6 12318 2 16.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.8 61 4.22
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3RN3 1.6 10 12318 12318 82 0.15 0.15 0.1492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 1.925 t_gen_planes 0.016 t_bond_d 0.01 t_trig_c_planes 0.01 t_nbd 0.008 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 951 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 10
Software Software Software Name Purpose bioteX data collection bioteX data reduction MERLOT phasing TNT refinement bioteX data scaling