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HUMAN METHIONINE AMINOPEPTIDASE 2 COMPLEXED WITH ANGIOGENESIS INHIBITOR FUMAGILLIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XGS PDB ENTRY 1XGS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 pH 5.4
Crystal Properties Matthews coefficient Solvent content 2.8 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.7 α = 90 b = 99.58 β = 90 c = 101.95 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 4 MIRRORS 1998-06-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 26.6 94.7 0.078 0.078 13.4 3.9 40944 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 99.4 0.149 0.149 6.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XGS 1.8 25 40791 2059 94.7 0.193 0.232 RANDOM 23.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.1 p_staggered_tor 12.9 p_planar_tor 6.6 p_scangle_it 4.05 p_scbond_it 2.68 p_mcangle_it 2.64 p_mcbond_it 1.91 p_multtor_nbd 0.244 p_singtor_nbd 0.173 p_xyhbond_nbd 0.118
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.1 p_staggered_tor 12.9 p_planar_tor 6.6 p_scangle_it 4.05 p_scbond_it 2.68 p_mcangle_it 2.64 p_mcbond_it 1.91 p_multtor_nbd 0.244 p_singtor_nbd 0.173 p_xyhbond_nbd 0.118 p_planar_d 0.034 p_angle_d 0.028 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2769 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 35
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling