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STRUCTURE OF UBIQUITIN-LIKE PROTEIN, RUB1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UBI PDB ENTRY 1UBI WITH NON-CONSERVED RESIDUES TRUNCATED INTO ALANINE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.22 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.6 α = 90 b = 35.6 β = 102.8 c = 37.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR SIEMENS 1997-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 95 0.051 2.9 7919
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1UBI WITH NON-CONSERVED RESIDUES TRUNCATED INTO ALANINE 1.7 30 7919 7919 95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16 t_angle_deg 2.325 t_gen_planes 0.017 t_bond_d 0.015 t_trig_c_planes 0.008 t_incorr_chiral_ct t_pseud_angle t_it t_nbd
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 572 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 14
Software Software Software Name Purpose AMoRE phasing TNT refinement XDS data reduction CCP4 data scaling ROTAVATA data scaling