1DL4
THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL | 0.1 M NACL | 7.0 | 1 atm | 278 | ||
2 | 2D NOESY | 1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL | 0.1 M NACL | 7.0 | 1 atm | 283 | ||
3 | 2D NOESY | 1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL | 0.1 M NACL | 7.0 | 1 atm | 298 | ||
4 | 2D ROESY | 1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL | 0.1 M NACL | 7.0 | 1 atm | 298 | ||
5 | DQF-COSY | 1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL | 0.1 M NACL | 7.0 | 1 atm | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 750 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
NOE-RESTRAINTED MOLECULAR DYNAMICS /SIMULATED ANNEALING | THE STRUCTURE IS BASED ON A TOTAL OF 477 NOE-DERIVED DISTANCE CONSTRAINTS, 80 EMPIRICAL SUGAR PUCKER RESTRAINTS, 32 BACKBONE ANGLE DIHEDRAL RESTRAINTS, AND 18 EMPIRICAL PLANARITY RESTRAINTS. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 7 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.0 | BRUKER |
2 | structure solution | X-PLOR | 3.851 | A.BRUNGER |
3 | processing | Felix | 97.0 | BIOSYM TECHNOLOGIES |
4 | refinement | CORMA | 5.2 | BORGIAS, B.A., THOMAS, P.D., LI, H., KUMAR, A., AND TONELLI, M. |
5 | iterative matrix relaxation | MARDIGRAS | 3.0 | BORGIAS, B.A., THOMAS, P.D., LI, H., KUMAR, A., AND TONELLI, M. |