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METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS IN COMPLEX WITH PROPARGYLGLYCINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CL1 PDB ENTRY 1CL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 3.2M AMMONIUM SULPHATE, 0.2M LISO4, 0.1M CITRATE PH5.6, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.85 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.258 α = 90 b = 88.258 β = 90 c = 217.849 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 28.9 97.6 0.045 23.5 3.6 48724 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.26 77.4 0.196 6.05 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CL1 2.18 25 48747 2462 97.6 0.14 0.193 RANDOM 24.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 15 p_special_tor 15 p_planar_tor 4.1 p_scangle_it 2.557 p_mcangle_it 1.822 p_scbond_it 1.78 p_mcbond_it 1.31 p_multtor_nbd 0.251 p_singtor_nbd 0.181
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 15 p_special_tor 15 p_planar_tor 4.1 p_scangle_it 2.557 p_mcangle_it 1.822 p_scbond_it 1.78 p_mcbond_it 1.31 p_multtor_nbd 0.251 p_singtor_nbd 0.181 p_xyhbond_nbd 0.148 p_chiral_restr 0.114 p_planar_d 0.035 p_angle_d 0.032 p_plane_restr 0.0206 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5943 Nucleic Acid Atoms Solvent Atoms 847 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing