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Fluoride-inhibited substrate complex of Saccharomyces cerevisiae inorganic pyrophosphatase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 19 MICROLITER SITTING DROPS 16-20% MPD, 30 MM MES, PH 6.0, 1 MM MNCL2, 0.5 MM NA2P2O7H2, 5 MM NAF,10 MG/ML PROTEIN
Crystal Properties Matthews coefficient Solvent content 2.65 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.77 α = 90 b = 102.34 β = 90 c = 115.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 97.6 0.081 9.8 4.5 53366 2 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 92.6 0.247
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 8 2 87817 3711 85.3 0.155 0.155 0.1635 0.182 0.1882 RANDOM 10.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 0.09 -1.97
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.2 c_scangle_it 3.46 c_scbond_it 2.86 c_angle_deg 1.5 c_mcangle_it 1.02 c_improper_angle_d 0.94 c_mcbond_it 0.67 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.2 c_scangle_it 3.46 c_scbond_it 2.86 c_angle_deg 1.5 c_mcangle_it 1.02 c_improper_angle_d 0.94 c_mcbond_it 0.67 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4475 Nucleic Acid Atoms Solvent Atoms 648 Heterogen Atoms 39
Software Software Software Name Purpose CNS refinement HKL data reduction DENZO data reduction SCALEPACK data scaling X-PLOR phasing