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Bromodomain from GCN5 complexed with acetylated H4 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.2M AMMONIUM SULPHATE, 20% V/V GLYCEROL, 4MM DITHIOTHREITOL, 100 MM HEPES PH 7.5, 125MM NACL 5:1 PEPTIDE:PROTEIN
Crystal Properties Matthews coefficient Solvent content 2.16 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.68 α = 90 b = 71.92 β = 90 c = 89.2 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2000-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 19.1 99.8 0.073 0.073 24.5 7.4 88913 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.98 99.5 0.204 0.204 8.7 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.87 19 11944 572 99.8 0.187 0.192 0.209 0.2046 RANDOM 21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 0.4 0.6
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 5.3 p_angle_d 3.9 p_mcangle_it 3.6 p_scbond_it 3.4 p_mcbond_it 2.3 p_singtor_nbd 0.31 p_chiral_restr 0.094 p_bond_d 0.016 p_plane_restr 0.006 p_angle_deg
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 5.3 p_angle_d 3.9 p_mcangle_it 3.6 p_scbond_it 3.4 p_mcbond_it 2.3 p_singtor_nbd 0.31 p_chiral_restr 0.094 p_bond_d 0.016 p_plane_restr 0.006 p_angle_deg p_planar_d p_hb_or_metal_coord p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 981 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing