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Core of the Alu domain of the mammalian SRP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1914 PDB ENTRY 1914, MODIFIED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 50MM NAOAC, 10MM MGCL2, 140MM NACL, 390MM (NH4)2SO4, 21% PEG2000, pH 5.00
Crystal Properties Matthews coefficient Solvent content 4.2 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.448 α = 90 b = 186.621 β = 90 c = 189.824 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 1999-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 94.9 0.104 5.6 2.4 16328 67.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.22 3.35 95.1 0.468 1.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1914, MODIFIED 3.2 47.46 16328 829 94.1 0.245 0.245 0.291 RANDOM 57.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.23 6.15 -2.92
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.8 c_scangle_it 3.98 c_mcangle_it 3.19 c_scbond_it 2.44 c_mcbond_it 1.88 c_angle_deg 1.4 c_improper_angle_d 0.66 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.8 c_scangle_it 3.98 c_mcangle_it 3.19 c_scbond_it 2.44 c_mcbond_it 1.88 c_angle_deg 1.4 c_improper_angle_d 0.66 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2392 Nucleic Acid Atoms 1079 Solvent Atoms 22 Heterogen Atoms 15
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling AMoRE phasing