☰ Navigation Tabs
STRUCTURE OF INORGANIC PYROPHOSPHATASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WGJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.34 54.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.318 α = 90 b = 103.087 β = 90 c = 116.518 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 8 85.4 0.075 11.95 3.6 212495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.17 75.5 0.37 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1WGJ 1.15 8 211693 85.5 0.1361 0.1194 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 42 4448 5562.12
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.108 s_zero_chiral_vol 0.093 s_non_zero_chiral_vol 0.09 s_similar_adp_cmpnt 0.049 s_from_restr_planes 0.0304 s_similar_dist 0.029 s_angle_d 0.026 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.005 s_anti_bump_dis_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4510 Nucleic Acid Atoms Solvent Atoms 1023 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR phasing SHELXL phasing SHELXL-97 refinement