1EXK
SOLUTION STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF THE ESCHERICHIA COLI CHAPERONE PROTEIN DNAJ.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 600 uM DnaJ CRD U-15N; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; | 95% H2O/5% D2O | 50 mM | 6.8 | 1 atm | 293 | |
2 | 3D_13C-separated_NOESY | 600 uM DnaJ CRD U-15N,13C; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; 2 mM DTT; 0.02% NaN3 | 95% H2O/5% D2O | 50 mM | 6.8 | 1 atm | 293 | |
3 | 13C/15N CN-NOESY | 600 uM DnaJ CRD U-15N,13C; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; 2 mM DTT; 0.02% NaN3 | 95% H2O/5% D2O | 50 mM | 6.8 | 1 atm | 293 | |
4 | HNHA | 600 uM DnaJ CRD U-15N; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; | 95% H2O/5% D2O | 50 mM | 6.8 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | DRX | 600 |
3 | Bruker | DMX | 750 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics followed by simulated annealing | The structures are based on 1361 unique NOE-based distance restraints and 99 torsion angle restaints and 24 stereo assignments. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 112 |
Conformers Submitted Total Number | 20 |
Representative Model | 19 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The sequence-specific assignments were completed using standard double and triple resonance NMR experiments. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.1 | Bruker |
2 | data analysis | NMRView | 4.1.2 | Johnson |
3 | data analysis | SANE | 1.0 | Duggan and Legge |
4 | structure solution | DYANA | 1.5 | Guentert |
5 | refinement | Amber | 6.0 | Case |
6 | iterative matrix relaxation | SPIRIT | 1.0 | Zhu |