1F0Z
SOLUTION STRUCTURE OF THIS, THE SULFUR CARRIER PROTEIN IN E.COLI THIAMIN BIOSYNTHESIS
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1 mM ThiS U-15N; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 93% H2O/7% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 1 mM ThiS U-15N, 13C; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 100% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 | |
3 | 3D_13C-separated_NOESY | 1 mM ThiS U-15N, 13C; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 93% H2O/7% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 | |
4 | 2D NOESY | 1 mM ThiS NA; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 93% H2O/7% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 | |
5 | HNHA | 1 mM ThiS U-15N; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 93% H2O/7% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 | |
6 | HMQC-J | 1 mM ThiS U-15N; 25 mM sodium phosphate, 5 mM DTT, 5 mg/ml pepstatin, 50 microM EDTA, 50 microM chloramphenicol | 93% H2O/7% D2O | 25 mM sodium phosphate | 6.6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing molecular dynamics | The structures are based on a total of 882 restraints, 802 are NOE-derived distance constraints, 64 dihedral angle restraints, 16 distance restraints from hydrogen bonds | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 24 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1B | Varian Associates |
2 | processing | NMRPipe | 1.7 | Delaglio |
3 | data analysis | PIPP | 1 | Delaglio |
4 | structure solution | X-PLOR | 3.851 | Brunger |
5 | refinement | X-PLOR | 3.851 | Brunger |