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STRUCTURE OF THE BOMBYX MORI LYSOZYME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 291 PEG 8000, ammonium sulfate, sodium cacodylate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.957779 68.9623903
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.268 α = 90 b = 77.268 β = 90 c = 72.925 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 283 IMAGE PLATE MAC Science DIP-2000 1999-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 100 98.6 0.08 20.9 7.12 55985 7862 1 49.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 96.4 0.295 3.8388 5.1 742
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 2.5 10 7917 7685 747 97.1 0.1809 0.2226 RAMDOM 38.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.068 5.068 -10.136
RMS Deviations Key Refinement Restraint Deviation c_torsion_deg 23.47519 c_dihedral_angle_d 23.47519 c_scangle_it 2.5 c_mcangle_it 2 c_scbond_it 2 c_angle_deg 1.55289 c_mcbond_it 1.5 c_torsion_impr_deg 0.73009 c_improper_angle_d 0.73009 c_bond_d 0.008512
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 963 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing CNS refinement