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Pseudomonas aeruginosa cd1 nitrite reductase reduced cyanide complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NNO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 2M NA/K2 PHOSPHATE, 50MM TRIS-HCL, PH 8.4
Crystal Properties Matthews coefficient Solvent content 3.47 64.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.4 α = 90 b = 88.6 β = 90 c = 113.4 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 18 90.3 0.095 6.3 2.2 42035 2 45.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 89.3 0.356 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NNO 2.7 18 2 42035 1264 99.5 0.204 0.204 0.2019 0.247 0.2389 RANDOM 33.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.57 0.07
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.7 c_angle_deg 1.9 c_improper_angle_d 1.71 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.7 c_angle_deg 1.9 c_improper_angle_d 1.71 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8442 Nucleic Acid Atoms Solvent Atoms 599 Heterogen Atoms 188
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALA data scaling AMoRE phasing