1I5H
SOLUTION STRUCTURE OF THE RNEDD4 WWIII DOMAIN-RENAL BP2 PEPTIDE COMPLEX
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 15N/13C-edited NOESY | Sample 1:1mM rNedd4 WWIII U-15N,13C; 3mM rENaC bP2 NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; Sample 2:1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; MORE DETAILED DESCRIPTION GIVEN IN BMRB 4963 | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
2 | 3D 13C F1-filtered, F3-edited NOESY | 1mM rNedd4 WWIII U-15N,13C; 3mM rENaC bP2 NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 100% D2O | 0.01 | 6.5 | 1 atm | 303 | |
3 | 3D 15N/13C-edited NOESY | 1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
4 | 3D 13C F1-filtered, F3-edited NOESY | 1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 100% D2O | 0.01 | 6.5 | 1 atm | 303 | |
5 | HNCOCA_COHACA_CROSS | 1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
6 | HNCOCA_HNHA_CROSS | 1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
7 | J-HNHa | Sample 1:1mM rNedd4 WWIII U-15N,13C; 3mM rENaC bP2 NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; Sample 2:1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; MORE DETAILED DESCRIPTION GIVEN IN BMRB 4963 | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
8 | J-HNHa | 1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 | |
9 | HNCO-Trosy | Sample 1:1mM rNedd4 WWIII U-15N,13C; 3mM rENaC bP2 NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; Sample 2:1mM rENaC bP2 U-15N,13C; 3mM rNedd4 WWIII NA; 10 mM Na+ phosphate, pH 6.5; 0.005 mM EDTA; 0.01 mM aprotinin; 0.005 mM leupeptin; 0.005 mM AEBSF; MORE DETAILED DESCRIPTION GIVEN IN BMRB 4963 | 90% H2O/10% D2O | 0.01 | 6.5 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | Preliminary structures were calculated using CNS1.0. These structures were then used as input into the program ARIA1.0 for noe assignment and structure refinement. These structures were calculated using 1799 unambiguous and 214 ambiguous NOEs, 14 hydrogen bond restraints, 44 dihedral angle restraints and directly refined against 33 Jhnha coupling constants. | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 170 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.8 | Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. |
2 | data analysis | NMRVeiw | 4.1.2 | Johnson, B.A and Blevis, B.A. |
3 | structure solution | CNS | 1.0 | Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T. and warren, G.L. |
4 | refinement | ARIA | 1.0 | Nilges, M. |