1I5V
SOLUTION STRUCTURE OF 2-(PYRIDO[1,2-E]PURIN-4-YL)AMINO-ETHANOL INTERCALATED IN THE DNA DUPLEX D(CGATCG)2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 mM 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol, 2mM d(CGATCG)2 160 mM KCl, 0.15 mM EDTA, 20 mM sodium phosphate | 90% H2O/10% D2O | 7 | ambient | 7 | ||
2 | 2D NOESY | 2 mM 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol, 2mM d(CGATCG)2 160 mM KCl, 0.15 mM EDTA, 20 mM sodium phosphate | 100% D2O | 7 | ambient | 7 | ||
3 | DQF-COSY | 2 mM 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol, 2mM d(CGATCG)2 160 mM KCl, 0.15 mM EDTA, 20 mM sodium phosphate | 90% H2O/10% D2O | |||||
4 | TOCSY | 2 mM 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol, 2mM d(CGATCG)2 160 mM KCl, 0.15 mM EDTA, 20 mM sodium phosphate | 90% H2O/10% D2O | |||||
5 | 1H-1H CT COSY | 2 mM 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol, 2mM d(CGATCG)2 160 mM KCl, 0.15 mM EDTA, 20 mM sodium phosphate | 90% H2O/10% D2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Bruker | AMX | 600 |
3 | Bruker | AMX | 400 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | calculation from randomized cartesian coordinates | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | The submitted conformer models are the 22 structures with the lowest experimental energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 22 |
Representative Model | 12 (closest to the average) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.A | |
2 | processing | Felix | ||
3 | data analysis | Insight | 97 | |
4 | structure solution | Discover | ||
5 | refinement | Discover |