1IBX
NMR STRUCTURE OF DFF40 AND DFF45 N-TERMINAL DOMAIN COMPLEX
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O | |||||
2 | 3D_13C-separated_NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O | |||||
3 | 3D_15N-separated_NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O | |||||
4 | 3D_15N-separated_NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O | |||||
5 | 2D NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O | |||||
6 | 2D NOESY | 0.6 mM DFF40/DFF45 NTD complex 90% deuterated, U-15N/13C labeled DFF40 non-labeled DFF45 | 20 mM Phosphate buffer 5 mM DTT, 50 mM NaCl 10%D2O/90%H2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 500 |
3 | Varian | INOVA | 750 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics/simulated annealing | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 10 |
Representative Model | 10 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. Chain B, is produced as a chimeric protein containing protein G B1 domain (-44 to 11) and DFF45 (12 to 100). The residues of the Protein G B1 domain are used as a solubility enhancement tag to improve solubility and stability of target protein. These residues are not included in the structural calculation, thus the coordinates are not deposited. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 97 | Molecular Simulation, Inc. |
2 | data analysis | XEASY | v1.3 | Ch. Bartels et. al. |
3 | structure solution | DYANA | v1.5 | Guntert et al. |
4 | structure solution | X-PLOR | v3.8 | Brunger |
5 | refinement | X-PLOR | 3.851 | Brunger |