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STRUCTURE OF THE DNA BINDING DOMAIN OF THE GPNU1 SUBUNIT OF LAMBDA TERMINASE
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D_NOESY 1 mM homonuclear gpNu1 DBD 90% H2O/10% D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 2 2D_NOESY 1 mM homonuclear gpNu1 DBD 99.99 % D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 3 3D_15N-separated_NOESY 1 mM {15N} gpNu1 DBD 90% H2O/10% D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 4 HNHA 1 mM {15N} gpNu1 DBD 90% H2O/10% D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 5 3D_13C-separated_NOESY 1 mM {13C,15N} gpNu1 DBD 99.99 % D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 6 4D_13C-separated_NOESY 1 mM {13C,15N} gpNu1 DBD 99.99 % D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 7 3D_13C-separated_NOESY 1 mM {13C,15N} gpNu1 DBD 90% H2O/10% D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00 8 2D_half-filtered_13C/15N_NOESY 1 mM 50%/50% {13C,15N} gpNu1 DBD/{12C,14N}gpNu1 DBD 90% H2O/10% D2O 20 mM deuterated TRIS 6.0 AMBIENT 298.00
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing THE R-6 SUMMATION METHOD WAS USED WITHIN A SIMULATED ANNEALING PROTOCOL. NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details mixing times were 50 or 100 ms
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 1 Delaglio et al. 2 data analysis NMRView 5.0 Johnson et al. 3 data analysis PIPP 1 Garrett et al. 4 structure solution X-PLOR 3.851 BRUNGER ET AL. 5 refinement X-PLOR 3.851 BRUNGER ET AL.