1JMQ
YAP65 (L30K mutant) WW domain in Complex with GTPPPPYTVG peptide
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, | 90% H20, 10% D20 | 100mM NaCl | 6 | 1 atm | 288 | |
2 | 2D TOCSY | 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, | 90% H20, 10% D20 | 100mM NaCl | 6 | 1 atm | 288 | |
3 | 2D NOESY | 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, | 100%D20 | 100mM NaCl | 6 | 1 atm | 288 | |
4 | 2D TOCSY | 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, | 100%D20 | 100mM NaCl | 6 | 1 atm | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DMX | 750 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | 2000K, 200 runs, force constants for NOE 50 kcalmol-1rad-2, 590 restraints including 20 hydrogen bond restraints | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.6 | BRUKER, A.G. |
2 | collection | XwinNMR | 2.6 | BRUKER, A.G. |
3 | data analysis | ANSIG | 3.3 | Kraulis, P.J |
4 | refinement | X-PLOR | 3.1 | Brunger, A. |