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MURINE T-CELL RECEPTOR VARIABLE DOMAIN/FAB COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VFA PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC experimental model PDB 1MLB PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC experimental model PDB 1FLR PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC experimental model PDB 1BEC PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 15% PEG6000, 100MM HEPES PH 6.9-7.5, 200MM NACL, 0.1% NAN3, pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.5 54.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 187.31 α = 90 b = 80.95 β = 90 c = 52.08 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MIRRORS 1996-10-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM02 ESRF BM02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 86.7 0.086 3.1 24517 76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 64.9 0.395 1.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC 2.5 10 20232 1048 0.221 0.219 0.2219 0.2366 RANDOM 48.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 1.26 p_mcangle_it 1.12 p_scbond_it 0.75 p_mcbond_it 0.59 p_chiral_restr 0.213 p_planar_d 0.112 p_angle_d 0.034 p_plane_restr 0.014 p_bond_d 0.013 p_angle_deg
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 1.26 p_mcangle_it 1.12 p_scbond_it 0.75 p_mcbond_it 0.59 p_chiral_restr 0.213 p_planar_d 0.112 p_angle_d 0.034 p_plane_restr 0.014 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5172 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms
Software Software Software Name Purpose XDS data scaling XSCALE data scaling AMoRE phasing REFMAC refinement XDS data reduction