☰ Navigation Tabs
Crystal Structure of beta-methylaspartase from Clostridium tetanomorphum. Apo-structure.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 292 Tris-HCl, NaCl, PEG6000, ethylene glycol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.16 43.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.281 α = 90 b = 109.26 β = 90 c = 108.991 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.946439 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30.86 99.9 0.094 6.1 64042 63750 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 99.9 0.398 0.019 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 57.74 60746 60746 3228 99.89 0.178 0.178 0.175 0.222 0.2141 RANDOM 33.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.04 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.966 r_scangle_it 5.266 r_dihedral_angle_1_deg 4.837 r_scbond_it 3.636 r_angle_refined_deg 2.052 r_mcangle_it 1.984 r_mcbond_it 1.184 r_angle_other_deg 0.976 r_symmetry_hbond_refined 0.546 r_symmetry_vdw_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.966 r_scangle_it 5.266 r_dihedral_angle_1_deg 4.837 r_scbond_it 3.636 r_angle_refined_deg 2.052 r_mcangle_it 1.984 r_mcbond_it 1.184 r_angle_other_deg 0.976 r_symmetry_hbond_refined 0.546 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.295 r_nbd_refined 0.238 r_xyhbond_nbd_refined 0.214 r_nbd_other 0.209 r_chiral_restr 0.137 r_xyhbond_nbd_other 0.089 r_bond_refined_d 0.031 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbtor_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6374 Nucleic Acid Atoms Solvent Atoms 659 Heterogen Atoms 8
Software Software Software Name Purpose SnB phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling