Solution NMR Structure of C. elegans Protein ZK652.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR41.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 4D_13C-separated_NOESY | 0.9 mM 13C,15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 99% D2O | 100% D2O | 10 mM ammonium acetate, 50 mM NaCl | 5.5 | ambient | 298 | |
| 2 | 3D_simultaneous_13C,15N-separated_NOESY | 0.9 mM 99%-13C,99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 | 95% H2O/5% D2O | 10 mM ammonium acetate, 50 mM NaCl | 5.5 | ambient | 298 | |
| 3 | HNHA | 0.9 mM 99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 | 95% H2O/5% D2O | 10 mM ammonium acetate, 50 mM NaCl | 5.5 | ambient | 298 | |
| 4 | 3D_15N-SEPARATED_NOESY | 0.9 mM 99%-13C,99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 | 95% H2O/5% D2O | 10 mM ammonium acetate, 50 mM NaCl | 5.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| 2 | Varian | INOVA | 600 |
| 3 | Varian | UNITY | 600 |
| 4 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry, simulated annealing | the X-PLOR routines dg_full_embed.inp, dgsa.inp, and refine_gentle.inp were used to produce the structural ensemble | VNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 26 |
| Conformers Submitted Total Number | 24 |
| Representative Model | 9 (closest to the average,fewest violations,lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using triple-resonance NMR spectroscopy |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | 6.1 | Varian, Inc. |
| 2 | processing | Felix | 98 | MSI |
| 3 | data analysis | Felix | 98 | MSI |
| 4 | structure solution | X-PLOR | 3.840 | A.T. Brunger |
| 5 | refinement | X-PLOR | 3.840 | A.T. Brunger |














