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Crystal structure of a binary complex of the catalytic subunit of protein kinase CK2 with Mg-AMPPNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 293 PEG3350, SODIUM ACETATE, TRIS/HCL, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.075 α = 90 b = 59.624 β = 103.59 c = 45.642 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MACSCIENCE double mirrors 1999-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 54.86 95.6 0.054 25.7 5.2 31998 30598 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.92 76.6 0.552 2.1 4.3 2435
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.86 55 29633 964 96.26 0.20727 0.20601 0.2177 0.24374 0.2594 RANDOM 29.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.55 -1.49 0.15 1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.427 r_dihedral_angle_1_deg 4.092 r_scangle_it 3.445 r_scbond_it 2.163 r_angle_refined_deg 1.545 r_mcangle_it 1.523 r_mcbond_it 0.858 r_angle_other_deg 0.75 r_symmetry_hbond_refined 0.255 r_symmetry_vdw_other 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.427 r_dihedral_angle_1_deg 4.092 r_scangle_it 3.445 r_scbond_it 2.163 r_angle_refined_deg 1.545 r_mcangle_it 1.523 r_mcbond_it 0.858 r_angle_other_deg 0.75 r_symmetry_hbond_refined 0.255 r_symmetry_vdw_other 0.254 r_nbd_refined 0.24 r_xyhbond_nbd_other 0.211 r_nbd_other 0.209 r_xyhbond_nbd_refined 0.207 r_symmetry_vdw_refined 0.14 r_chiral_restr 0.097 r_symmetry_hbond_other 0.045 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbtor_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2727 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 33
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement