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Atomic structure of CYP121, a mycobacterial P450
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 277 ammonium sulphate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.04 39.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.184 α = 90 b = 77.184 β = 90 c = 263.829 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 10 88.5 0.092 6.5 209932 176158 12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.06 1.088 63.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.06 10 176158 176158 9314 88.5 0.1337 0.1337 0.13266 0.1369 0.15309 0.1557 RANDOM 10.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.34 r_sphericity_free 7.459 r_dihedral_angle_1_deg 5.579 r_sphericity_bonded 4.842 r_scangle_it 3.899 r_scbond_it 2.815 r_angle_other_deg 2.448 r_mcangle_it 2.248 r_angle_refined_deg 1.943 r_rigid_bond_restr 1.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.34 r_sphericity_free 7.459 r_dihedral_angle_1_deg 5.579 r_sphericity_bonded 4.842 r_scangle_it 3.899 r_scbond_it 2.815 r_angle_other_deg 2.448 r_mcangle_it 2.248 r_angle_refined_deg 1.943 r_rigid_bond_restr 1.576 r_mcbond_it 1.571 r_symmetry_vdw_other 0.306 r_nbd_other 0.28 r_chiral_restr 0.249 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.212 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.191 r_nbtor_other 0.17 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3081 Nucleic Acid Atoms Solvent Atoms 792 Heterogen Atoms 103
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling MLPHARE phasing REFMAC refinement HKL-2000 data reduction