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Crystal Structure of Mitochondrial Cytochrome bc1 Complexed with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 277 PEG 4000, ammonium acetate, potassium chloride, glycerol, DMG/SPC, MOPS, pH 7.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.65 66.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.842 α = 90 b = 153.842 β = 90 c = 590.374 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.2 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 99.7 59010 58833 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.201 3.275 98.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3.2 10 58833 54977 1742 99.89 0.2172 0.21728 0.21478 0.29554 RANDOM 30.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.62 1.62 -3.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.569 r_scangle_it 9.851 r_scbond_it 6.941 r_dihedral_angle_1_deg 3.585 r_mcangle_it 3.31 r_angle_refined_deg 2.056 r_mcbond_it 0.765 r_chiral_restr 0.356 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.569 r_scangle_it 9.851 r_scbond_it 6.941 r_dihedral_angle_1_deg 3.585 r_mcangle_it 3.31 r_angle_refined_deg 2.056 r_mcbond_it 0.765 r_chiral_restr 0.356 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.26 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.223 r_bond_refined_d 0.019 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16510 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 154
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling