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Crystal structure of mouse ARF1 (delta17-Q71L), GTP form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HFV PDB ENTRY 1HFV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 PEG3350, ammonium acetate, acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.82 31.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.605 α = 90 b = 50.77 β = 113.37 c = 52.081 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.977 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 89.8 0.043 12.9 44086 44072
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.58 62.8 0.201 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HFV 1.5 20 44072 41851 2221 100 0.19104 0.19104 0.18998 0.1907 0.21084 0.2125 RANDOM 13.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.19 0.12 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.348 r_dihedral_angle_1_deg 4.051 r_scangle_it 3.293 r_scbond_it 2.096 r_angle_refined_deg 1.384 r_mcangle_it 1.31 r_symmetry_hbond_refined 0.863 r_mcbond_it 0.707 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.348 r_dihedral_angle_1_deg 4.051 r_scangle_it 3.293 r_scbond_it 2.096 r_angle_refined_deg 1.384 r_mcangle_it 1.31 r_symmetry_hbond_refined 0.863 r_mcbond_it 0.707 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2664 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 66
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing