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Crystal structure of 3-oxoacyl-(acyl carrier protein) reductase (TM1169) from Thermotoga maritima at 2.50 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I01
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5 293 20% PEG-6000, 0.1M citric acid pH 5.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.515 α = 90 b = 117.12 β = 90 c = 140.847 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2002-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 41.17 85.4 0.12 7.7 2.5 31633 31633 51.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 42.7 0.229 1.6 1.4 2231
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD, MOLECULAR REPLACEMENT THROUGHOUT 1i01 2.5 41.17 30035 1562 85.03 0.19662 0.19404 0.2029 0.2468 0.2516 RANDOM 15.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -6.16 8.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.365 r_dihedral_angle_4_deg 22.795 r_dihedral_angle_3_deg 20.263 r_dihedral_angle_1_deg 6.747 r_scangle_it 2.774 r_angle_refined_deg 1.755 r_scbond_it 1.648 r_mcangle_it 1.216 r_angle_other_deg 0.944 r_mcbond_it 0.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.365 r_dihedral_angle_4_deg 22.795 r_dihedral_angle_3_deg 20.263 r_dihedral_angle_1_deg 6.747 r_scangle_it 2.774 r_angle_refined_deg 1.755 r_scbond_it 1.648 r_mcangle_it 1.216 r_angle_other_deg 0.944 r_mcbond_it 0.705 r_symmetry_hbond_refined 0.487 r_symmetry_vdw_other 0.312 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.204 r_nbd_other 0.189 r_chiral_restr 0.095 r_nbtor_other 0.089 r_xyhbond_nbd_refined 0.031 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7165 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 35
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling