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Internalin (INLA, Listeria monocytogenes) - functional domain, uncomplexed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 METHOD: VAPOUR DIFFUSION / HANGING DROP, PROTEIN: 10 MG/ML IN 10 MM HEPES PH 7.0, RESEVOIR: 10% PEG 4000, 100 MM MES/TRIS PH 6.0, 100 MM AMMONIUM SULFATE, 10 MM CACL2. CRYSTALS GREW APPROX 2 YEARS AFTER SETUP. TRUE CRYSTALLIZATION CONDITIONS PROBABLY DEVIATE FROM THOSE INDICATED
Crystal Properties Matthews coefficient Solvent content 2.42 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.919 α = 90 b = 55.881 β = 113.07 c = 97.78 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 25.1 92 0.062 14.4 6.2 50336
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 84.3 0.385 3.4 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 91.29 59440 3170 99.5 0.133 0.131 0.161 0.1848 RANDOM 15.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.37 0.78 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.82 r_scangle_it 3.205 r_mcangle_it 2.143 r_scbond_it 1.973 r_angle_refined_deg 1.678 r_mcbond_it 1.321 r_angle_other_deg 0.857 r_nbd_refined 0.315 r_nbd_other 0.265 r_symmetry_hbond_refined 0.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.82 r_scangle_it 3.205 r_mcangle_it 2.143 r_scbond_it 1.973 r_angle_refined_deg 1.678 r_mcbond_it 1.321 r_angle_other_deg 0.857 r_nbd_refined 0.315 r_nbd_other 0.265 r_symmetry_hbond_refined 0.237 r_xyhbond_nbd_refined 0.236 r_symmetry_vdw_other 0.232 r_metal_ion_refined 0.19 r_symmetry_vdw_refined 0.186 r_chiral_restr 0.124 r_nbtor_other 0.094 r_bond_refined_d 0.022 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3505 Nucleic Acid Atoms Solvent Atoms 702 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing