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Internalin (INLA, Listeria monocytogenes) - functional domain, uncomplexed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 METHOD: VAPOUR DIFFUSION / HANGING DROP PROTEIN: 10 MG/ML IN 10 MM HEPES PH 7.0 RESEVOIR: 10% PEG 4000, 100 MM MES/TRIS PH 6.0, 100 MM AMMONIUM SULFATE, 10 MM CACL2
Crystal Properties Matthews coefficient Solvent content 2.19 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.589 α = 90 b = 67.907 β = 103.48 c = 154.251 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25.1 89.5 0.051 22.1 3.1 122892
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 90.7 0.144 3.4 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 158.11 116640 6192 89.4 0.147 0.145 0.1591 0.184 0.194 RANDOM 13.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.39 0.05 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.805 r_scangle_it 2.929 r_scbond_it 1.833 r_angle_refined_deg 1.424 r_mcangle_it 1.158 r_angle_other_deg 0.936 r_mcbond_it 0.647 r_symmetry_vdw_other 0.258 r_nbd_refined 0.249 r_nbd_other 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.805 r_scangle_it 2.929 r_scbond_it 1.833 r_angle_refined_deg 1.424 r_mcangle_it 1.158 r_angle_other_deg 0.936 r_mcbond_it 0.647 r_symmetry_vdw_other 0.258 r_nbd_refined 0.249 r_nbd_other 0.246 r_symmetry_vdw_refined 0.218 r_metal_ion_refined 0.202 r_symmetry_hbond_refined 0.179 r_xyhbond_nbd_refined 0.175 r_nbtor_other 0.17 r_chiral_restr 0.098 r_bond_refined_d 0.025 r_bond_other_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7010 Nucleic Acid Atoms Solvent Atoms 1540 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing