☰ Navigation Tabs
NAPHTHALENE 1,2-DIOXYGENASE, TERNARY COMPLEX WITH DIOXYGEN AND INDOLE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EG9 PDB ENTRY 1EG9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 AMMONIUM SULPHATE 2M, MES 0.1M, DIOXANE 2-3%, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.827 α = 90 b = 139.827 β = 90 c = 208.876 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40 96 0.062 6.3 4.4 147355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.47 88.9 0.357 2.1 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EG9 1.4 40 144384 2939 95.8 0.19 0.1919 0.2 0.1899 RANDOM 19.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.24 0.47 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.009 r_dihedral_angle_1_deg 5.263 r_scangle_it 4.042 r_scbond_it 2.598 r_angle_refined_deg 1.7 r_mcangle_it 1.684 r_mcbond_it 0.93 r_symmetry_hbond_refined 0.879 r_symmetry_vdw_refined 0.465 r_metal_ion_refined 0.231
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.009 r_dihedral_angle_1_deg 5.263 r_scangle_it 4.042 r_scbond_it 2.598 r_angle_refined_deg 1.7 r_mcangle_it 1.684 r_mcbond_it 0.93 r_symmetry_hbond_refined 0.879 r_symmetry_vdw_refined 0.465 r_metal_ion_refined 0.231 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.118 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5089 Nucleic Acid Atoms Solvent Atoms 546 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling