1OB2

E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1TTTPDB ENTRY 1TTT

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.41.8M AMMONIUM SULPHATE, 10 MM MAGNESIUM CHLORIDE, 20 MM TRIS-MES, PH 6.4
Crystal Properties
Matthews coefficientSolvent content
4.5170

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 196.41α = 90
b = 196.41β = 90
c = 196.41γ = 90
Symmetry
Space GroupP 41 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1996-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.354898.50.15410.1518794-343
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.353.5399.50.42935.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1TTT3.3547.641879496397.80.220.220.265RANDOM41.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.61-0.3-0.3
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d27.5
c_scangle_it7.47
c_mcangle_it6.78
c_scbond_it4.99
c_mcbond_it4.17
c_angle_deg1.5
c_improper_angle_d1.35
c_bond_d0.009
c_bond_d_na
c_bond_d_prot
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d27.5
c_scangle_it7.47
c_mcangle_it6.78
c_scbond_it4.99
c_mcbond_it4.17
c_angle_deg1.5
c_improper_angle_d1.35
c_bond_d0.009
c_bond_d_na
c_bond_d_prot
c_angle_d
c_angle_d_na
c_angle_d_prot
c_angle_deg_na
c_angle_deg_prot
c_dihedral_angle_d_na
c_dihedral_angle_d_prot
c_improper_angle_d_na
c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3035
Nucleic Acid Atoms1662
Solvent Atoms
Heterogen Atoms113

Software

Software
Software NamePurpose
CNSrefinement
DENZOdata reduction
Agrovatadata scaling
AMoREphasing