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ISOPENICILLIN N SYNTHASE aminoadipoyl-cysteinyl-aminobutyrate-FE-NO COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BLZ PDB ENTRY 1BLZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.27 45.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.75 α = 90 b = 71.35 β = 90 c = 101.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 1997-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 19.3 88.1 0.065 13 3.3 76397
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.36 78.7 0.344 3.1 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1BLZ 1.3 58.72 70330 2914 87.2 0.167 0.166 0.189 0.2398 RANDOM 7.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.41 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.601 r_dihedral_angle_1_deg 5.703 r_scangle_it 2.747 r_scbond_it 2.085 r_angle_refined_deg 1.974 r_mcangle_it 1.314 r_mcbond_it 0.934 r_angle_other_deg 0.904 r_nbd_refined 0.226 r_symmetry_vdw_other 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.601 r_dihedral_angle_1_deg 5.703 r_scangle_it 2.747 r_scbond_it 2.085 r_angle_refined_deg 1.974 r_mcangle_it 1.314 r_mcbond_it 0.934 r_angle_other_deg 0.904 r_nbd_refined 0.226 r_symmetry_vdw_other 0.195 r_nbd_other 0.187 r_symmetry_vdw_refined 0.134 r_chiral_restr 0.126 r_xyhbond_nbd_refined 0.116 r_symmetry_hbond_refined 0.096 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2645 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling