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ISOPENICILLIN N SYNTHASE aminoadipoyl-cysteinyl-aminobutyrate-FE COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BLZ PDB ENTRY 1BLZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 4.57 72.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.976 α = 90 b = 100.976 β = 90 c = 115.658 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 19 99.1 0.083 13.7 3.6 34696
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.6 0.4 3.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BLZ 2.2 87.71 33292 1398 98.8 0.174 0.173 0.1811 0.197 0.2045 RANDOM 13.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.08 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.765 r_scangle_it 3.929 r_scbond_it 2.452 r_angle_refined_deg 1.713 r_mcangle_it 1.397 r_angle_other_deg 1.201 r_mcbond_it 0.772 r_symmetry_vdw_other 0.337 r_nbd_other 0.241 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.765 r_scangle_it 3.929 r_scbond_it 2.452 r_angle_refined_deg 1.713 r_mcangle_it 1.397 r_angle_other_deg 1.201 r_mcbond_it 0.772 r_symmetry_vdw_other 0.337 r_nbd_other 0.241 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_refined 0.125 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.103 r_nbtor_other 0.088 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2641 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling