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Synthetic Ubiquitin with fluoro-Leu at 50 and 67
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UBI PDB ENTRY 1UBI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 SEEDED FROM DROP CONTAINING CONTAINING 5 MUL 20MG/ML UBIQUITIN AND 5 MUL 30% PEG 4000 IN 50MM CACODYLATE-HCL PH 5.6. STORED IN 38% PEG 4000.
Crystal Properties Matthews coefficient Solvent content 1.8 32.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.84 α = 90 b = 42.77 β = 90 c = 28.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MARRESEARCH MIRRORS 1999-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 6 89.9 0.11 10 4.5 13828 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.31 1.32 81.4 0.54 2.3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1UBI 1.32 8 14305 89.9 0.222 0.222 0.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2 3212 2736
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.4 s_angle_d 0.1 s_zero_chiral_vol 0.1 s_non_zero_chiral_vol 0.1 s_bond_d 0.02 s_similar_dist 0.02 s_anti_bump_dis_restr 0.02 s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 604 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXL-97 phasing