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Crystal structure of the alkylsulfatase AtsK, a non-heme Fe(II) alphaketoglutarate dependent Dioxygenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 25 MM NA ACETATE, 25 MM NA CITRATE PH 5.6, 7% PEG 4000, 30% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3.15 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.242 α = 90 b = 145.344 β = 90 c = 159.457 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH PREMIRROR, TRIANGULAR MONOCHROMATOR, BENT MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 20 99.6 0.048 19.21 5.34 134420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 2 99.9 0.3566 4.32 4.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.89 20 125806 6720 99.2 0.171 0.17 0.1836 0.191 RANDOM 26.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.65 1.05 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.654 r_scangle_it 6.073 r_scbond_it 4.032 r_mcangle_it 3.187 r_mcbond_it 1.926 r_angle_refined_deg 1.7 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.261 r_nbd_other 0.26 r_nbd_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.654 r_scangle_it 6.073 r_scbond_it 4.032 r_mcangle_it 3.187 r_mcbond_it 1.926 r_angle_refined_deg 1.7 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.261 r_nbd_other 0.26 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.208 r_symmetry_vdw_refined 0.182 r_metal_ion_refined 0.143 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.113 r_nbtor_other 0.087 r_bond_refined_d 0.02 r_gen_planes_other 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7637 Nucleic Acid Atoms Solvent Atoms 760 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing DM phasing REFMAC refinement