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NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 2 2D TOCSY 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 3 DQF-COSY 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 4 2D NOESY 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 275
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYPLUS 600 2 Varian UNITYPLUS 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 15 Representative Model 15 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS 1.0 Brunger 2 data analysis Felix 2000 Molecular Simulations Inc. 3 processing NMRPipe 2.1 Delaglio 4 refinement CNS 1.0 Brunger