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Glycine 24 to Serine mutation of aspartate decarboxylase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AW8 PDB entry 1AW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 292 NH42SO4, citric acid, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.8 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.436 α = 90 b = 71.436 β = 90 c = 219.157 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 98.6 0.078 33.8 30.9 23414 2.5 24.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 90.5 0.345 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1AW8 2 25 23414 21839 1180 98.76 0.16636 0.16636 0.16541 0.1789 0.18464 0.1968 RANDOM 14.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.389 r_scangle_it 3.708 r_scbond_it 2.242 r_angle_refined_deg 1.459 r_mcangle_it 1.269 r_angle_other_deg 0.833 r_mcbond_it 0.673 r_symmetry_vdw_other 0.319 r_symmetry_hbond_refined 0.3 r_xyhbond_nbd_refined 0.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.389 r_scangle_it 3.708 r_scbond_it 2.242 r_angle_refined_deg 1.459 r_mcangle_it 1.269 r_angle_other_deg 0.833 r_mcbond_it 0.673 r_symmetry_vdw_other 0.319 r_symmetry_hbond_refined 0.3 r_xyhbond_nbd_refined 0.281 r_symmetry_vdw_refined 0.273 r_nbd_other 0.257 r_nbd_refined 0.219 r_nbtor_other 0.106 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1827 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing