☰ Navigation Tabs
CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 AMMONIUM SULPHATE 30%, MES 0.1M PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.4 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.86 α = 90 b = 75.36 β = 90 c = 78.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 54.2 99.1 0.055 5.5 27.4 5.6 40782 14.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.78 1.81 98.3 0.162 16.2 6.7 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 20 41488 1285 99.1 0.117 0.1237 0.176 0.1723 RANDOM 16.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.2 p_staggered_tor 13.6 p_planar_tor 5.5 p_scangle_it 3.785 p_mcangle_it 2.877 p_scbond_it 2.822 p_mcbond_it 2.182 p_multtor_nbd 0.249 p_singtor_nbd 0.17 p_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.2 p_staggered_tor 13.6 p_planar_tor 5.5 p_scangle_it 3.785 p_mcangle_it 2.877 p_scbond_it 2.822 p_mcbond_it 2.182 p_multtor_nbd 0.249 p_singtor_nbd 0.17 p_chiral_restr 0.12 p_xyhbond_nbd 0.107 p_angle_d 0.031 p_planar_d 0.031 p_plane_restr 0.014 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3328 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 20
Software Software Software Name Purpose AMoRE phasing REFMAC refinement SCALEPACK data scaling