1QK9
The solution structure of the domain from MeCP2 that binds to methylated DNA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
2 | COSY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
3 | TOCSY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
4 | HNCA | 90% H2O / 10% D2O | 6.0 | 291 | ||||
5 | HNCOCA | 90% H2O / 10% D2O | 6.0 | 291 | ||||
6 | CBCACONH | 90% H2O / 10% D2O | 6.0 | 291 | ||||
7 | HNCO | 90% H2O / 10% D2O | 6.0 | 291 | ||||
8 | HNCACB | 90% H2O / 10% D2O | 6.0 | 291 | ||||
9 | HCCH-TOCSY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
10 | HCCONH-TOCSY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
11 | CCONH-TOCSY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
12 | 15N-EDITTED HSQC | 90% H2O / 10% D2O | 6.0 | 291 | ||||
13 | 13C-EDITTED HSQC | 90% H2O / 10% D2O | 6.0 | 291 | ||||
14 | HBHACONH | 90% H2O / 10% D2O | 6.0 | 291 | ||||
15 | 15N-EDITTED HSQC-NOESY | 90% H2O / 10% D2O | 6.0 | 291 | ||||
16 | 13C-EDITTED HSQC-NOESY | 90% H2O / 10% D2O | 6.0 | 291 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | AMBIGUOUS DISTANCE RESTRAINTS WERE USED SEE M.NILGES CITATION | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | LOWEST ENERGIES |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 28 |
Representative Model | 5 (n/a) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | BRUNGER | |
2 | structure solution | VNMR | ||
3 | structure solution | Azara | ||
4 | structure solution | ANSIG | ||
5 | structure solution | X-PLOR |